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A content-based dataset recommendation system for researchers-a case study on Gene Expression Omnibus (GEO) repository

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A content-based dataset recommendation system for researchers-a case study on Gene Expression Omnibus (GEO) repository

It is a rising development amongst researchers to make their knowledge publicly obtainable for experimental reproducibility and knowledge reusability. Sharing knowledge with fellow researchers helps in growing the visibility of the work. On the opposite hand, there are researchers who’re inhibited by the shortage of knowledge sources. To overcome this problem, many repositories and data bases have been established to this point to ease knowledge sharing. Further, prior to now 20 years, there was an exponential enhance within the variety of datasets added to those dataset repositories.

However, most of those repositories are domain-specific, and none of them can advocate datasets to researchers/customers. Naturally, it’s difficult for a researcher to maintain monitor of all of the related repositories for potential use. Thus, a dataset recommender system that recommends datasets to a researcher primarily based on earlier publications can improve their productiveness and expedite additional analysis. The potential to focus onto subnetworks, a number of visualizations and simulation choices will allow the AMD analysis neighborhood to computationally mannequin subnetworks or to check experimentally new hypotheses arising from connectivities in the AMD pathway map.

This work adopts an info retrieval (IR) paradigm for dataset recommendation. We hypothesize that two elementary variations exist between dataset recommendation and PubMed-style biomedical IR past the corpus. First, as an alternative of key phrases, the question is the researcher, embodied by his or her publications. Second, to filter the related datasets from non-relevant ones, researchers are higher represented by a set of pursuits, versus your entire physique of their analysis. This second strategy is applied utilizing a non-parametric clustering method.

These clusters are used to advocate datasets for every researcher utilizing the cosine similarity between the vector representations of publication clusters and datasets. The most normalized discounted cumulative acquire at 10 (NDCG@10), precision at 10 (p@10) partial and p@10 strict of 0.89, 0.78 and 0.61, respectively, have been obtained utilizing the proposed methodology after handbook analysis by 5 researchers. As per one of the best of our data, that is the primary study of its variety on content-based dataset recommendation.

Cancer PRSweb: An Online Repository with Polygenic Risk Scores for Major Cancer Traits and Their Evaluation in Two Independent Biobanks

To facilitate scientific collaboration on polygenic threat scores (PRSs) analysis, we created an intensive PRS on-line repository for 35 frequent most cancers traits integrating freely obtainable genome-wide affiliation research (GWASs) abstract statistics from three sources: printed GWASs, the NHGRI-EBI GWAS Catalog, and UK Biobank-based GWASs. Our framework condenses these abstract statistics into PRSs utilizing varied approaches comparable to linkage disequilibrium pruning/p worth thresholding (mounted or data-adaptively optimized thresholds) and penalized, genome-wide impact dimension weighting.
We evaluated the PRSs in two biobanks: the Michigan Genomics Initiative (MGI), a longitudinal biorepository effort at Michigan Medicine, and the population-based UK Biobank (UKB). For every PRS assemble, we offer measures on predictive efficiency and discrimination. Besides PRS analysis, the Cancer-PRSweb platform options assemble downloads and phenome-wide PRS affiliation study outcomes (PRS-PheWAS) for predictive PRSs. We count on this built-in platform to speed up PRS-related most cancers analysis.
This multicenter, double-blind, randomized, placebo-controlled study enrolled sufferers ≥ 18 years with lively SLE and reasonable to extreme rash and/or arthritis regardless of steady glucocorticoid doses (7.5-30 mg/day prednisone equal) and antimalarials for ≥ Four weeks and/or immunosuppressants for ≥ eight weeks earlier than screening. Stable glucocorticoid doses have been required by way of week 16 with optionally available taper from weeks 16 to 24.
Patients have been randomized (1:1) to 80 U RCI subcutaneously or placebo each different day to week 4, then twice weekly to week 24. Endpoints included the proportion of SLE Responder Index (SRI)-Four responders at week 16; modifications from baseline to week 16 in 28 Swollen Joint Count/Tender Joint Count (28 SJC/TJC) and Cutaneous Lupus Erythematosus Disease Area and Severity Index (CLASI)-Activity rating; and modifications from baseline to week 24 in inflammatory cytokines. Safety was assessed by antagonistic occasions.
A content-based dataset recommendation system for researchers-a case study on Gene Expression Omnibus (GEO) repository

Advancing COVID-19 differentiation with a sturdy preprocessing and integration of multi-institutional open-repository laptop tomography datasets for deep studying evaluation

The coronavirus pandemic and its unprecedented penalties globally has spurred the curiosity of the synthetic intelligence analysis neighborhood. A plethora of printed research have investigated the position of imaging comparable to chest X-rays and laptop tomography in coronavirus illness 2019 (COVID-19) automated analysis. Οpen repositories of medical imaging knowledge can play a big position by selling cooperation amongst institutes in a world-wide scale. However, they might induce limitations associated to variable knowledge high quality and intrinsic variations because of the huge number of scanner distributors and imaging parameters.

In this study, a state-of-the-art customized U-Net mannequin is offered with a cube similarity coefficient efficiency of 99.6% together with a switch studying VGG-19 primarily based mannequin for COVID-19 versus pneumonia differentiation exhibiting an space underneath curve of 96.1%. The above was considerably improved over the baseline mannequin skilled with no segmentation in chosen tomographic slices of the identical dataset. The offered study highlights the significance of a sturdy preprocessing protocol for picture evaluation inside a heterogeneous imaging dataset and assesses the potential diagnostic worth of the offered COVID-19 mannequin by evaluating its efficiency to the state-of-the-art. Health-related knowledge is saved in various repositories which can be managed and managed by completely different entities.

Chicken Immunoglobulin Y (IgY) ELISA Kit
RDR-IgY-Ch-48Tests 48 Tests
EUR 326
Chicken Immunoglobulin Y (IgY) ELISA Kit
RDR-IgY-Ch-96Tests 96 Tests
EUR 445
Chicken IgY
E61I020 100ug
EUR 343
Chicken IgY
31-AC25 50 mg
EUR 270
Description: Purified Chicken IgY
Rat IgG-Biotin conjugate (isotype control) (Isotype control)
20005-B 100 ug
EUR 164
Rat IgG-FITC conjugate (isotype control) (Isotype control)
20005-F 100 ug
EUR 164
Rat IgG-HRP conjugate (isotype control) (Isotype control)
20005-HP 100 ug
EUR 164
Rat IgG-PE conjugate (isotype control) (Isotype control)
20005-PE 25 tests
EUR 202
Rabbit Isotype Control
IMN-001 100 µg
EUR 199.5
Rabbit Isotype Control
abx200646-100ug 100 ug
EUR 328
  • Shipped within 2-3 weeks.
Chicken IgY Protein
abx060688-50mg 50 mg
EUR 551
  • Shipped within 5-10 working days.
Chicken IgY Protein
abx060689-10ml 10 ml
EUR 495
  • Shipped within 5-10 working days.
Chicken IgY Protein
abx061434-1g 1 g
EUR 676
  • Shipped within 5-10 working days.
Chicken IgY (Unconjugated)
LF-SA8052 5 mg
EUR 181
Description: Normal chicken yolk
Chicken IgY (Unconjugated)
LF-SA8052A 10 mg
EUR 296
Description: Normal chicken yolk
Chicken IgG unlabeled (isotype control, non-immune), purified
20010-1 1 mg
EUR 141
Custom purification of IgY from up to 6 egg yolks
IGY-1 1
EUR 651
Custom purification of IgY from up to 12 egg yolks
IGY-2 1
EUR 895
Positive control tissue section for each antibody; Based on availability INQUIRE
Control-Slides Set of 5
EUR 176
Chicken IgG-Biotin conjugate (isotype control, non-immune), purified
20010-1-B 0.5 mg
EUR 225
Chicken IgG-FITC conjugate (isotype control, non-immune), purified
20010-1-F 0.5 mg
EUR 225
Chicken IgG-HRP conjugate (isotype control, non-immune), purified
20010-1-HP 0.5 mg
EUR 225
Chicken IgM-Biotin conjugate (isotype control, non-immune) purified
20010-2-1-b 0.1 mg
EUR 225
Chicken IgG-Fc unlabeled (isotype control, non-immune), purified
20010-3-UL 0.1 mg
EUR 202
Chicken IgG Fab fragment (isotype control, non-immune), purified
20010-Fab-1 0.5 mg
EUR 225
Rabbit IgG Isotype Control
IC001-100ul 100ul
EUR 122
Mouse IgG Isotype Control
IC002-100ul 100ul
EUR 122
Rabbit IgG Isotype Control
abx125003-100ul 100 ul
EUR 203
  • Shipped within 5-10 working days.
Mouse IgG1 Isotype Control
abx139001-01mg 0.1 mg
EUR 314
  • Shipped within 5-12 working days.
Mouse IgG1 Isotype Control
abx139002-01mg 0.1 mg
EUR 314
  • Shipped within 5-12 working days.
Mouse IgM Isotype Control
abx139003-01mg 0.1 mg
EUR 314
  • Shipped within 5-12 working days.
Mouse IgG2a Isotype Control
abx139004-01mg 0.1 mg
EUR 314
  • Shipped within 5-12 working days.
Mouse IgG2a Isotype Control
abx139005-01mg 0.1 mg
EUR 314
  • Shipped within 5-12 working days.
Mouse IgG2b Isotype Control
abx139006-01mg 0.1 mg
EUR 314
  • Shipped within 5-12 working days.
Mouse IgG1 Isotype Control
abx139008-01mg 0.1 mg
EUR 314
  • Shipped within 5-12 working days.
Mouse IgG2a Isotype Control
abx139009-01mg 0.1 mg
EUR 314
  • Shipped within 5-12 working days.
Mouse IgG3 Isotype Control
abx139010-01mg 0.1 mg
EUR 314
  • Shipped within 5-12 working days.
Mouse IgG2b Isotype Control
abx139011-01mg 0.1 mg
EUR 314
  • Shipped within 5-12 working days.
Mouse IgM Isotype Control
abx020500-02mg 0.2 mg
EUR 439
  • Shipped within 5-10 working days.
Mouse IgG1 Isotype Control
abx405007-01mg 0.1 mg
EUR 411
  • Shipped within 1 week.
Mouse IgG1 Isotype Control
abx405009-05mg 0.5 mg
EUR 690
  • Shipped within 1 week.
Mouse IgG1 Isotype Control
abx405012-1mg 1 mg
EUR 1080
  • Shipped within 1 week.
Mouse IgG2a Isotype Control
abx405013-100tests 100 tests
EUR 411
  • Shipped within 1 week.
Mouse IgG2a Isotype Control
abx405015-05mg 0.5 mg
EUR 690
  • Shipped within 1 week.
Mouse IgG2a Isotype Control
abx405018-1mg 1 mg
EUR 1107
  • Shipped within 1 week.
Rat IgG1 Isotype Control
abx405020-05mg 0.5 mg
EUR 384
  • Shipped within 1 week.
Rat IgG2a Isotype Control
abx405022-1ml 1 ml
EUR 300
  • Shipped within 1 week.
Rat IgG2a Isotype Control
abx405024-05mg 0.5 mg
EUR 384
  • Shipped within 1 week.
Rat IgG2a Isotype Control
abx405027-1mg 1 mg
EUR 565
  • Shipped within 1 week.
Rat IgG2c Isotype Control
abx405034-025mg 0.25 mg
EUR 537
  • Shipped within 1 week.
Mouse IgG3 Isotype Control
abx405035-01mg 0.1 mg
EUR 411
  • Shipped within 1 week.
Rat IgG1 Isotype Control
abx405039-05mg 0.5 mg
EUR 384
  • Shipped within 1 week.
Rat IgG1 Isotype Control
20-abx405041
  • EUR 300.00
  • EUR 439.00
  • 0.1 mg
  • 1 mg
  • Shipped within 1 week.
Rat IgG2a Isotype Control
abx405045-05mg 0.5 mg
EUR 384
  • Shipped within 1 week.
Rat IgG2a Isotype Control
20-abx405047
  • EUR 300.00
  • EUR 439.00
  • 0.1 mg
  • 1 mg
  • Shipped within 1 week.
Rat IgG2b Isotype Control
abx405051-05mg 0.5 mg
EUR 384
  • Shipped within 1 week.
Rat IgG2b Isotype Control
20-abx405053
  • EUR 300.00
  • EUR 439.00
  • 0.1 mg
  • 1 mg
  • Shipped within 1 week.
Mouse IgG2b Isotype Control
abx405056-100tests 100 tests
EUR 411
  • Shipped within 1 week.
Mouse IgG2b Isotype Control
abx405061-1mg 1 mg
EUR 1080
  • Shipped within 1 week.
Mouse IgM Isotype Control
abx405062-100tests 100 tests
EUR 411
  • Shipped within 1 week.
Mouse IgG1 Isotype Control
abx405064-100tests 100 tests
EUR 411
  • Shipped within 1 week.
Mouse IgG1 Isotype Control
abx405067-05mg 0.5 mg
EUR 829
  • Shipped within 1 week.
Mouse IgG2a Isotype Control
abx405070-100tests 100 tests
EUR 411
  • Shipped within 1 week.
Mouse IgG2a Isotype Control
abx405073-05mg 0.5 mg
EUR 829
  • Shipped within 1 week.
Mouse IgG1 Isotype Control
abx200564-100ug 100 ug
EUR 314
  • Shipped within 3-5 working days.
Mouse IgG2a Isotype Control
abx200572-100ug 100 ug
EUR 314
  • Shipped within 3-5 working days.
Mouse IgG2b Isotype Control
abx200580-100ug 100 ug
EUR 314
  • Shipped within 3-5 working days.
Mouse IgG3 Isotype Control
abx200587-100ug 100 ug
EUR 356
  • Shipped within 3-5 working days.
Mouse IgM Isotype Control
abx200594-100ug 100 ug
EUR 314
  • Shipped within 3-5 working days.
Rat IgG2a Isotype Control
abx200644-500ug 500 ug
EUR 481
  • Shipped within 3-5 working days.
Rabbit Isotype Control (FITC)
abx200647-100test 100 test
EUR 328
  • Shipped within 3-5 working days.
Rabbit Isotype Control (PE)
abx200648-100test 100 test
EUR 328
  • Shipped within 3-5 working days.
IgG Isotype Control antibody
10R-6524 50 ug
EUR 133
Description: Armenian Hamster monoclonal IgG Isotype Control antibody
IgG Isotype Control antibody
10R-6525 50 ug
EUR 133
Description: Syrian Hamster monoclonal IgG Isotype Control antibody
Mouse IgG2a Isotype Control
10R-I117d 1 mg
EUR 553
Description: Purified Mouse IgG2a Isotype Control
Rat IgG2a Isotype Control
11-168-C025 0.025 mg
EUR 87
Rat IgG2b Isotype Control
11-169-C025 0.025 mg
EUR 87
Rat IgG Isotype Control
31-AR15 10 mg
EUR 220
Description: Purified Rat IgG Isotype Control
Rat IgG2b Isotype Control
31R-IC001 500 ug
EUR 241
Description: Purified Rat IgG2b Isotype Control
Rat IgG1 Isotype Control
RIGG1A-100 100 µg
EUR 545.04
Rat IgG1 Isotype Control
RIGG1A-25 25 µg
EUR 268.4
Rat IgG1 Isotype Control
RIGG1F-50 50 µg
EUR 297.52
Rat IgG1 Isotype Control
RIGG1F-500 500 µg
EUR 879.92
Rat IgG1 Isotype Control
RIGG1PE-100 100 µg
EUR 530.48
Rat IgG1 Isotype Control
RIGG1PE-25 25 µg
EUR 253.84
Rat IgG1 Isotype Control
RIGG1PP5.5-100 100 µg
EUR 588.72
Rat IgG1 Isotype Control
RIGG1PP5.5-25 25 µg
EUR 268.4
Rat IgG1 Isotype Control
RIGG1PU-50 50 µg
EUR 181.04
Rat IgG1 Isotype Control
RIGG1PU-500 500 µg
EUR 399.44
Rat IgG2a Isotype Control
RIGG2AA-100 100 µg
EUR 312.08
Rat IgG2a Isotype Control
RIGG2AA-25 25 µg
EUR 181.04
Rat IgG2a Isotype Control
RIGG2AB-200 200 µg
EUR 457.68
Rat IgG2a Isotype Control
RIGG2AB-50 50 µg
EUR 224.72
Rat IgG2a Isotype Control
RIGG2AF-200 200 µg
EUR 312.08
Rat IgG2a Isotype Control
RIGG2AF-50 50 µg
EUR 166.48
Rat IgG2a Isotype Control
RIGG2APE-100 100 µg
EUR 282.96
Rat IgG2a Isotype Control
RIGG2APE-25 25 µg
EUR 166.48
Rat IgG2a Isotype Control
RIGG2APP-100 100 µg
EUR 574.16
Rat IgG2a Isotype Control
RIGG2APP-25 25 µg
EUR 268.4
Rat IgG2a Isotype Control
RIGG2APP5.5-100 100 µg
EUR 646.96
Rat IgG2a Isotype Control
RIGG2APP5.5-25 25 µg
EUR 282.96
Rat IgG2a Isotype Control
RIGG2APU-50 50 µg
EUR 181.04
Rat IgG2a Isotype Control
RIGG2APU-500 500 µg
EUR 399.44
Rat IgG2b Isotype Control
RIGG2BA-100 100 µg
EUR 326.64
Rat IgG2b Isotype Control
RIGG2BA-25 25 µg
EUR 166.48
Rat IgG2b Isotype Control
RIGG2BB-200 200 µg
EUR 457.68
Rat IgG2b Isotype Control
RIGG2BB-50 50 µg
EUR 224.72
Rat IgG2b Isotype Control
RIGG2BF-200 200 µg
EUR 472.24
Rat IgG2b Isotype Control
RIGG2BF-50 50 µg
EUR 151.92
Rat IgG2b Isotype Control
RIGG2BPE-100 100 µg
EUR 268.4
Rat IgG2b Isotype Control
RIGG2BPE-25 25 µg
EUR 151.92
Rat IgG2b Isotype Control
RIGG2BPP-100 100 µg
EUR 574.16
Rat IgG2b Isotype Control
RIGG2BPP-25 25 µg
EUR 268.4
Rat IgG2b Isotype Control
RIGG2BPP5.5-100 100 µg
EUR 515.92
Rat IgG2b Isotype Control
RIGG2BPP5.5-25 25 µg
EUR 282.96
Rat IgG2b Isotype Control
RIGG2BPU-50 50 µg
EUR 122.8
Rat IgG2b Isotype Control
RIGG2BPU-500 500 µg
EUR 370.32
Rat IgG2c Isotype Control
RIGG2CA-25 25 µg
EUR 253.84
Rat IgG2c Isotype Control
RIGG2CB-50 50 µg
EUR 224.72
Rat IgG2c Isotype Control
RIGG2CF-50 50 µg
EUR 253.84
Rat IgG2c Isotype Control
RIGG2CPE-25 25 µg
EUR 239.28
Rat IgG2c Isotype Control
RIGG2CPP5.5-25 25 µg
EUR 282.96
Rat IgG2c Isotype Control
RIGG2CPU-50 50 µg
EUR 181.04
Rat IgG2c Isotype Control
RIGG2CPU-500 500 µg
EUR 399.44
Rat IgM Isotype Control
RIGMA-100 100 µg
EUR 705.2
Rat IgM Isotype Control
RIGMB-200 200 µg
EUR 778
Rat IgM Isotype Control
RIGMB-50 50 µg
EUR 253.84
Rat IgM Isotype Control
RIGMF-200 200 µg
EUR 778
Rat IgM Isotype Control
RIGMF-50 50 µg
EUR 253.84
Rat IgM Isotype Control
RIGMPE-100 100 µg
EUR 457.68
Rat IgM Isotype Control
RIGMPE-25 25 µg
EUR 239.28
Rat IgM Isotype Control
RIGMPP5.5-25 25 µg
EUR 355.76
Rat IgM Isotype Control
RIGMPU-50 50 µg
EUR 181.04
Rat IgM Isotype Control
RIGMPU-500 500 µg
EUR 399.44
Rabbit anti Chicken IgY
E61I0201 100ug
EUR 343
Chicken IgY precipitation reagent
85R-1010 4 ml
EUR 554
Description: Chicken IgY precipitation reagent for use in immunoassays
Chicken IgY (Non Immune)
31R-1052 1 ml
EUR 148
Description: Purified Chicken non immune IgY
Rabbit anti Chicken IgY
20-B9093R000-R0 5 ml
EUR 138
Description: Rabbit anti Chicken IgY antibody
Chicken IgY ELISA Kit
E-30Y 1 x 96 well plate
EUR 395
Anti-Chicken IgY antibody
STJ16100614 100 µg
EUR 813
Anti-Chicken IgY antibody
STJ16100615 50 µg
EUR 645
Anti-Chicken IgY antibody
STJ16101246 1 mg
EUR 191
Anti-Chicken IgY antibody
STJ16101247 1.2 mg
EUR 229
Anti-Chicken IgY antibody
STJ16101248 1.2 mg
EUR 282
Anti-Chicken IgY antibody
STJ16101363 1 mg
EUR 191
Anti-Chicken IgY antibody
STJ16101364 1.2 mg
EUR 229
Anti-Chicken IgY antibody
STJ16101365 1.2 mg
EUR 282
Donkey IgG (Control, non-immune, isotype control)
20028-1 1 mg
EUR 164
Chicken IgG-Fc-Biotin conjugate (isotype control, non-immune), purified
20010-3-B 0.1 mg
EUR 225
Chicken IgG-Fc-FITC conjugate (isotype control, non-immune), purified
20010-3-F 0.1 mg
EUR 225
Chicken IgG-Fc-HRP conjugate (isotype control, non-immune), purified
20010-3-HP 0.1 mg
EUR 225
Armenian Hamster IgG Isotype control
AIGGA-100 100 µg
EUR 574.16
Armenian Hamster IgG Isotype control
AIGGA-25 25 µg
EUR 282.96
Armenian Hamster IgG Isotype control
AIGGB-200 200 µg
EUR 472.24
Armenian Hamster IgG Isotype control
AIGGB-50 50 µg
EUR 239.28
Armenian Hamster IgG Isotype control
AIGGF-200 200 µg
EUR 545.04
Armenian Hamster IgG Isotype control
AIGGF-50 50 µg
EUR 268.4
Armenian Hamster IgG Isotype control
AIGGPE-100 100 µg
EUR 515.92
Armenian Hamster IgG Isotype control
AIGGPE-25 25 µg
EUR 253.84
Armenian Hamster IgG Isotype control
AIGGPP-100 100 µg
EUR 574.16

For occasion, Electronic Health Records are normally administered by governments. Electronic Medical Records are sometimes managed by well being care suppliers, whereas Personal Health Records are managed straight by sufferers. Recently, Blockchain-based well being report programs largely regulated by know-how have emerged as one other sort of repository. Repositories for storing well being knowledge differ from each other primarily based on price, stage of safety and high quality of efficiency. Not solely has the kind of repositories elevated lately, however the quantum of well being knowledge to be saved has elevated.